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GenePattern

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GenePattern 3.9.2 released!
 
GP 3.9.2 released: Search jobs by tags & comments, faster large file upload, new Mac installer & more http://ow.ly/KBiYO #bioinformatics
Run. Public Server · Download. Learn. User Guide · 10-Minute Tutorial · Differential Expression Tutorial · File Formats Guide · Administrators Guide · Programmers Guide · Concepts · Video Tutorials · Previous Versions · Modules; Analysis. RNA-seq-Based Gene Expression · Array-Based Gene ...
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GenePattern

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Office Hours today @ Noon!
 
Join us in Fuji (415 Main rm 4001) or via Hangouts @ Noon  - bring your GenePattern or GenomeSpace questions and find yourself a spot in the sun.
GenePattern and GenomeSpace Office Hours
Wed, March 11, 12:00 PM EDT
Hangouts

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Support for #Affymetrix ST chips, now in GP!
 
Now in GP: Support for @Affymetrix gene & exon ST arrays through AffySTExpressionFileCreator module http://ow.ly/Jp5S9 #bioinformatics
AffySTExpressionFileCreator Documentation, v0.x Print-icon ▸ Open Module on GenePattern Public Server. This module is currently in beta release (targeted for release as v1). The documentation may be incomplete. Description: Creates a RES or GCT file from a set of CEL files from Affymetrix ST ...
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GenePattern

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GenePattern 3.9.1 is now available!
 
GenePattern 3.9.1 released! Comments & tags for jobs, support for JavaScript visualizers & more http://ow.ly/HIX6q #bioinformatics
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GenePattern

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IGV module updated to address issues with launching from GenePattern.
 
Updated IGV module now available: addresses previous issues with launching IGV from GenePattern http://ow.ly/HEyYL #bioinformatics
IGV Documentation, v5 Print-icon ▸ Open Module on GenePattern Public Server. Description: Sends data in GenePattern to a running Integrative Genomics Viewer (IGV) application. Author: Jim Robinson, Marc-Danie Nazaire, Barbara Hill, Peter Carr (Broad Institute). Contact: ...
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GenePattern team coverage over the holidays
 
The GenePattern team will be on vacation Dec 24 - Jan 5. All servers and repositories will remain up. For details: http://www.broadinstitute.org/cancer/software/genepattern/blog/2014/12/22/genepattern-server-coverage-support-dec-24-jan-5
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GenePattern

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Office Hours today!
 
Drop by Fuji in 4001 415 Main st, or hop on a Hangout to get your GenePattern and GenomeSpace questions answered. 

We'll see you there!
GenePattern and GenomeSpace Office Hours
Wed, December 3, 2014, 12:00 PM EST
Hangouts

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GenePattern

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Office Hours - today @ noon!
 
Stop on by Fuji (415 Main 4001) or join us via HangOut - we look forward to helping you out!
GenePattern & GenomeSpace Office Hours
Wed, November 19, 2014, 12:00 PM EST
Hangouts

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GenePattern

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GenePattern 3.9.0 is out!
 
GenePattern 3.9.0 is released! Improved job status, job details, large file uploads & more! See blog for details http://ow.ly/CwaZj
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New Cuffidff Read_group_tracking modules in beta
 
New Read_group_trackingToGct beta adds gene symbols to Cuffdiff output ow.ly/xzK2p #RNAseq #bioinformatics
Oct 1 --- Read_group_trackingToGct (beta) updated to convert Cufflinks tracking IDs to gene symbols. Now available here and in the beta module repository. --- Sept 23 --- Trimmomatic update now available here and in the production module repository. --- Sept 5 --- Multiplot Studio bug fix update ...
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GenePattern

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Upcoming GenePattern server downtime
 
GenePattern broadinstitute.org servers unavailable for maintenance Tuesday, 3/24/15 from 6am - noon. More info at http://ow.ly/KpvUj
Posted on Friday, March 13, 2015 at 04:58PM by Barbara Hill Meyers. GenePattern servers at the Broad Institute will be offline for scheduled IT maintenance on. Tuesday, March 24, 2015; from 6 a.m. to noon. During this time the following servers will be unavailable: ...
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GenePattern

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GenePattern & GenomeSpace Office Hours today @ Noon in Yosemite & on Hangouts
 
Come on by Yosemite (75Ames 4001) or join us via Hangouts - trouble with Java? building a module? getting started in GenomeSpace?  Stop in and we'll help out!
GenePattern & GenomeSpace Office Hours
Wed, February 25, 12:00 PM EST
Hangouts

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FCSNormalization v2 available (via @GPArchive& BC Cancer Research Centre): updated to use less memory http://ow.ly/ITQtI #flowcytometry
Jan 20 -- IGV updated: addresses previous issues with launching IGV from GenePattern -- 9:10am Jan 20 -- The software update to 3.9.1 is complete. The "what's new in GenePattern" link from the home page will fill you in on the details. Please contact us at gp-help with your questions and ...
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GenePattern

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GenePattern & Genomspace office hours today!
 
We're back in the office! Come by and visit us today in Katahdin (415 Main Rm 2001) or hop on the Hangout.
GenePattern & GenomeSpace Office Hours
Wed, February 11, 12:00 PM EST
Hangouts

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GenePattern

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GenePattern & GenomeSpace office hours today at noon!
 
Stop by Fuji, or join us via Hangouts, today at noon for GenePattern & GenomeSpace Office Hours
GenePattern & GenomeSpace Office Hours
Wed, January 14, 12:00 PM EST
Hangouts

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GenePattern

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Updated PARIS now available: updated underlying metric, & allowed for NA/NaNs in the target profile file. http://ow.ly/FCwf7 #RNAi
Dec 2, 5:50 pm --- The maintenance update is complete and the system is back to normal. --- Nov 19 --- Acgh2Tab Convert acgh files to a tab-delimited format usable by Genomica, published in GPARC, now available for use on this server. --- Sept 22 --- Changes to GenePattern Data Storage Policy ...
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GenePattern

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GP Production upcoming downtime
 
The public server will be offline for a maintenance update this Wed, Nov 26, from 8am - 9am. More details here: ow.ly/EO3rQ
The server will be offline for a maintenance update on Wednesday, November 26 from 8:00 am to 9:00 am. We suggest waiting until after 9:00 before starting any new long running jobs or pipelines. Please correct the following errors before proceeding: Sign in to GenePattern, Click to Register ...
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GenePattern

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GPBroad is back up
 
For our Broadie users: The Internal GenePattern Server, gpbroad, is back up and running normally.
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GenePattern

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Office Hours starting soon!
 
Stop by Fuji (4001 415 Main) or join us via HangOut, for an all access session with the GenePattern and GenomeSpace teams.
GenePattern and GenomeSpace Office Hours
Wed, November 5, 2014, 12:00 PM EST
Hangouts

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GenePattern

Discussion  - 
 
GenePattern & GenomeSpace Office Hours today @ Noon
 
Join us in Fuji (415 Main Rm 4001) or via Hangout for Office Hours!
GenePattern & GenomeSpace Office Hours
Wed, October 8, 2014, 12:00 PM EDT
Hangouts

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