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Balti and Bioinformatics On-Air

This meeting's theme is open data and reproducible bioinformatics.

Wednesday 21st January, 4pm GMT (=11am EST, =8am PST, 00:00 China)

20 minute talks each (interactive Q&A through Google Hangouts enabled)

Draft schedule:

+0m C. Titus Brown, UC Davis: tba, but something to do with his new Moore Foundation proposal

+30m Scott Edmunds, GigaScience: New models for open data publishing

+50m Jane Landolin, Pacific Biosciences: Open Pacific Biosciences data for model organisms

+70m Michael Barton, JGI: nucleotid.es for de novo assembly benchmarking and Docker

+90m Nick Loman, U. Birmingham: Nanopore data updates and the "poreathon".

+100m Dave Lunt, University of Hull: ReproPhylo - Reproducible phylogenetics.

+110m Discussion (are we on the right track? Challenges? Containers and VMs - beneficial or the wrong direction?)
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Balti and Bioinformatics - 21st January - Open data and reproducible bioinformatics
Wed, January 21, 11:00 AM
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New article from +Joshua Quick, +Aaron Quinlan and myself looking at E. coli K-12 on the nanopore!

http://www.gigasciencejournal.com/content/3/1/22/abstract
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The popular Balti and Bioinformatics series returns, this time in virtual space! Join us for a nanopore-themed programme which will be streamed from Google Hangouts to YouTube.

Draft schedule (subject to change)

Times are British Summer Time (GMT+1)

Start: 14:00 BST, 13:00 GMT, 09:00 Eastern Standard Time

14.00 - Intro
14.05 - Clive Brown, Nanopore sequencing
14.45 - Nick Loman, Early data from nanopore sequencing: bioinformatics opportunities and challenges
15.15 - Matt Loose, Streaming data solutions for nanopore
15.30 - Josh Quick, Nanopore sequencing in outbreaks
15.45 - Torsten Seemann, Awesome pipelines for microbial genomics
16.15 - Finish

Please note that some talks may not be recorded, so make sure you tune in live so as not to miss anything!
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Balti and Bioinformatics "On-Air"
Wed, September 10, 2014, 9:00 AM
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Exciting!!!!! please let me know how can i download sample dataset with some assembly report.
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OK, I'll see if I can pull them. Thanks!
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All the #AGBT tweets for day 2 streaming live on the blog.
http://pathogenomics.bham.ac.uk/blog/2012/02/agbt-2012-day-2-tweets/
Well not much in the way of huge announcements yesterday at AGBT. The biggest announcement was probably the information that Illumina are testing 400bp single-end reads in R&D on the MiSeq, with t...
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Nick Loman

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Balti and Bioinformatics On-Air

This meeting's theme is open data and reproducible bioinformatics.

Wednesday 21st January, 4pm GMT (=11am EST, =8am PST, 00:00 China)

20 minute talks each (interactive Q&A through Google Hangouts enabled)

Draft schedule:

+0m C. Titus Brown, UC Davis: Self-interest: can it be a strategy for convincing scientists to share pre-publication data in a useful way?

+30m Scott Edmunds, GigaScience: New models for open data publishing

+50m Jane Landolin, Pacific Biosciences: Open Pacific Biosciences data for model organisms

+70m Michael Barton, JGI: nucleotid.es for de novo assembly benchmarking and Docker

+90m Nick Loman, U. Birmingham: Nanopore data updates and the "poreathon".

+100m Dave Lunt, University of Hull: ReproPhylo - Reproducible phylogenetics.

+110m Discussion (are we on the right track? Challenges? Containers and VMs - beneficial or the wrong direction?)
This Hangout On Air is hosted by Nick Loman. The live video broadcast will begin soon.
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Balti and Bioinformatics - 21st January - Open data and reproducible bioinformatics
Wed, January 21, 11:00 AM
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Where can i download it?
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This Hangout On Air is hosted by Nick Loman. The live video broadcast will begin soon.
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Nanopore R7.3 Run
Mon, September 8, 2014, 1:17 PM
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Thanks for sharing! Good night!
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Sometimes this genome blogging lark really pays off. Yesterday was one of those days as I got a sneak preview of the big announcement at AGBT, and 20 minutes to speak with Oxford Nanopore's Dan Tu...
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Sequencers for all! Or, rather, sequences for all.
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AGBT day 1 tweets! (Day 2). Great weather, beautiful beaches, palm trees, copious free alcohol … why would you want to go to AGBT when you can keep track via Twitter? I've hooked up a little scrip...
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Have him in circles
412 people
Marcos Oliveira de Carvalho's profile photo
Scott Edmunds's profile photo
Rob Edwards's profile photo
Lakshmanan Iyer's profile photo
Shaun Jackman's profile photo
NyKaMuRa Kyoshiro's profile photo
derrick tobias's profile photo
Jordi Aguera Martinez's profile photo
ThePeacefulAtheistt TPA's profile photo
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Nice, well-stocked and large Chinese supermarket, found some tianmianjiang (sweet fermented sauce) I needed for a Fuchsia Dunlop recipe.
Public - a year ago
reviewed a year ago
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