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Anton Petrov
Works at European Bioinformatics Institute
Attended Bowling Green State University
Lives in Cambridge, UK
2,886 views
AboutPosts+1's
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Introduction
Morzhebludos, bioinformatician,  aficionado.

Currently Bioinformatician/Web Developer at the European Bioinformatics Institute working on the RNAcentral project.

Worked at BGSU with Professors Neocles Leontis and Craig Zirbel. Lead developer of RNA 3D Hub.

Favourite authors: Boris Vian, Virginia Woolf, Jane Austen, Mayakovskiy, Dostoyevskiy, Maugham, Hemingway.

Favourite directors: Antonioni, Fellini, Bergman, Tati, Tarkovskiy, Goddard, Truffaut.

Favourite journals: Nature, Science, Nucleic Acids Research, RNA, Bioinformatics.

Favourite cities: London, Vancouver, New York, St. Petersburg, Paris, Philadelphia.

My research publications:
  1. Comprehensive survey and geometric classification of base triples in RNA structures. NAR
  2. WebFR3D—a server for finding, aligning and analyzing recurrent RNA 3D motifs. NAR
  3. A Three-Dimensional RNA Motif in Potato spindle tuber viroid Mediates Trafficking from Palisade Mesophyll to Spongy Mesophyll in Nicotiana benthamiana. PMC
  4. Quantum chemical studies of nucleic acids: can we construct a bridge to the RNA structural biology and bioinformatics communities? Pubmed
  5. Understanding Sequence Variability of RNA Motifs Using Geometric Search and IsoDiscrepancy Matrices. Abstract and pdf


Bragging rights
RNA 3D Hub, WebFR3D, R3D Align, JAR3D, RNA 3D Motif Atlas
Education
  • Bowling Green State University
    Bioinformatics, 2007 - 2012
  • St.Petersburg State University
    Biology, 2003 - 2007
Basic Information
Gender
Male
Work
Occupation
Bioinformatician/Web Developer
Skills
Python (Django, SqlAlchemy), Perl, Oracle, Javascript (jQuery), CSS (Twitter Bootstrap), PHP (CodeIgniter), Matlab, MySQL.
Employment
  • European Bioinformatics Institute
    Bioinformatician/Web Developer, 2013 - present
  • Bowling Green State University
    Postdoc, 2012 - 2013
  • Bowling Green State University
    Graduate Assistant (Teaching & Research), 2007 - 2012
Places
Map of the places this user has livedMap of the places this user has livedMap of the places this user has lived
Currently
Cambridge, UK
Previously
St.Petersburg, Russia - Bowling Green, Ohio

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Oh man, what are the odds. I get calls from casinos all the time asking if I'm the VP of Bally technologies, but at least those are completely different fields of work.
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iPfam: a database of protein family and domain interactions found in the...
nar.oxfordjournals.org

Abstract The database iPfam, available at http://ipfam.org, catalogues Pfam domain interactions based on known 3D structures that are found

ArchDB 2014: structural classification of loops in proteins
nar.oxfordjournals.org

Abstract The function of a protein is determined by its three-dimensional structure, which is formed by regular (i.e. β-strands and α-helice

The non-nuclear genome: including a mitochondrial genome in GRCh38
genomeref.blogspot.com

The GRC maintains and improves the reference nuclear assembly only. The MITOMAP (http://www.mitomap.org/MITOMAP) group has served a similar

Install and Configure wget on OS X Mavericks 10.9 and fix SSL GNUTLS error
crosstown.coolestguidesontheplanet.com

how to install download the source code for wget and compile to run on OS X 10.9 Mavericks using the GCC compiler from xcode and fix the SSL

RNA–DNA differences in human mitochondria restore ancestral form of 16S ...
genome.cshlp.org

Abstract RNA transcripts are generally identical to the underlying DNA sequences. Nevertheless, RNA–DNA differences (RDDs) were found in the

RNA secondary structure diagrams for very large molecules: RNAfdl
bioinformatics.oxfordjournals.org

Abstract Summary: There are many programs that can read the secondary structure of an RNA molecule and draw a diagram, but hardly any that c

Multiple pagination in the same page
catherinetenajeros.blogspot.com

My boss give me a task to apply paging in the tables. I have four tables in the same page and I need to apply paging on it. I stop then thin

Analysis of base-pairing probabilities of RNA molecules involved in prot...
bioinformatics.oxfordjournals.org

Abstract Motivation: Understanding the details of protein–RNA interactions is important to reveal the functions of both the RNAs and the pro

Automated identification of RNA 3D modules with discriminative power in ...
nar.oxfordjournals.org

Abstract Recent progress in predicting RNA structure is moving towards filling the ‘gap’ in 2D RNA structure prediction where, for example,

RNA nanotechnology for computer design and in vivo computation
rsta.royalsocietypublishing.org

Abstract Molecular-scale computing has been explored since 1989 owing to the foreseeable limitation of Moore's law for silicon-based computa

Astrogenomics: big data, old problems, old solutions?
genomebiology.com

Comment. Astrogenomics: big data, old problems, old solutions? Aaron Golden , S George Djorgovski and John M Greally. Genome Biology 2013, 1

The mcrypt extension is missing | PHP OS X Lion How to Install mcrypt
www.coolestguyplanettech.com

installing and configuring mcrypt to work in a Mac OS X 10.8 Mountain Lion and 10.7 development environment using php 5.3.13 and libmcrypyt

BMC Bioinformatics | Full text | The Enzyme Portal: A case study in appl...
www.biomedcentral.com

User-centred design (UCD) is a type of user interface design in which the needs and desires of users are taken into account at each stage of

BMC Bioinformatics | Abstract | PFClust: a novel parameter free clusteri...
www.biomedcentral.com

We present the algorithm PFClust (Parameter Free Clustering), which is able automatically to cluster data and identify a suitable number of

Rna Nanotechnology and Therapeutics
books.google.co.uk

books.google.co.uk - Interest in RNA nanotechnology has increased in recent years as recognition of its potential for applications in nanome

Conservation of mRNA secondary structures may filter out mutations in Es...
nar.oxfordjournals.org

Abstract Recent reports indicate that mutations in viral genomes tend to preserve RNA secondary structure, and those mutations that disrupt

RNAlyzer—novel approach for quality analysis of RNA structural models
nar.oxfordjournals.org

Abstract The continuously increasing amount of RNA sequence and experimentally determined 3D structure data drives the development of comput

BMC Bioinformatics | Abstract | bioWeb3D: an online webGL 3D data visual...
www.biomedcentral.com

Data visualization is critical for interpreting biological data. However, in practice it can prove to

Анна Каренина
market.android.com

Shop Google Play on the web. Purchase and enjoy instantly on your Android phone or tablet without the hassle of syncing.

Structure-based whole-genome realignment reveals many novel noncoding RNAs
genome.cshlp.org

Abstract Recent genome-wide computational screens that search for conservation of RNA secondary structure in whole-genome alignments (WGAs)