Profile cover photo
Profile photo
Sanjiv Kumar
179 followers
179 followers
About
Posts

Post has attachment
Sequence Variation of Rare Outer Membrane Protein β-Barrel Domains in Clinical Strains Provides Insights into the Evolution of Treponema pallidum subsp. pallidum, the Syphilis Spirochete
http://mbio.asm.org/content/9/3/e01006-18.short ABSTRACT In recent years, considerable progress has been made in topologically and functionally characterizing integral outer membrane proteins (OMPs) of Treponema pallidum subspecies pallidum, the syphilis sp...
Add a comment...

Post has attachment
The major outer sheath protein forms distinct conformers and multimeric complexes in the outer membrane and periplasm of Treponema denticola
Recent Article:  https://www.nature.com/articles/s41598-017-13550-6 The major outer sheath protein (MOSP) is a prominent constituent of the cell envelope of  Treponema denticola  (TDE) and one of its principal virulence determinants. Bioinformatics predicts...
Add a comment...

Post has attachment
The Treponema pallidum Outer Membrane
Recent Article:  https://link.springer.com/chapter/10.1007/82_2017_44 The outer membrane (OM) of  Treponema pallidum , the uncultivatable agent of venereal syphilis, has long been the subject of misconceptions and controversy. Decades ago, researchers postu...
Add a comment...

Post has attachment
Consensus Phylogenetic trees of Fifteen Prokaryotic Aminoacyl-tRNA Synthetase Polypeptides based on Euclidean Geometry of All-Pairs Distances and Concatenation
An interesting one from my friend.  Read full here:  http://biorxiv.org/content/early/2016/05/06/051623 For comments and quarries please write to  rbargaje[at]systemsbiology[dot]org  Most molecular phylogenetic trees depict the relative closeness or the
ex...
Add a comment...

Post has attachment
Prediction of peptidoglycan hydrolases- a new class of antibacterial proteins
Recent article from our lab:   Read more at: http://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-2753-8  For comments and quarries please write to me or ashok[at]iiserb.ac.in Background The efficacy of antibiotics
against bacterial infections ...
Add a comment...

Post has attachment
Reconstruction of bacterial and viral genomes from multiple metagenomes
Recent article from our lab: Several metagenomic projects have been accomplished or are in progress.
However, in most cases, it is not feasible to generate complete genomic
assemblies of species from the metagenomic sequencing of a complex
environment. O...
Add a comment...

Post has attachment

Post has attachment
Predicting Beta Barrel Outer Membrane Proteins (OMPs)
1.        Pred-TMBB
(2004) : http://bioinformatics.biol.uoa.gr/PRED-TMBB/input.jsp PRED-TMBB: a web server for predicting the topology of
beta-barrel outer membrane proteins. The beta-barrel outer membrane proteins
constitute one of the two known structural...
Add a comment...

Post has attachment
Woods: A fast and accurate functional annotator and classifier of genomic and metagenomic sequences
Another recent publication from our lab.  Functional annotation of the gigantic metagenomic data is one of the major time-consuming and computationally demanding tasks, which is currently a bottleneck for the efficient analysis. The commonly used homology-b...
Add a comment...

Post has shared content
Recent work from our laboratory.
Woods: A fast and accurate functional annotator and classifier of genomic and metagenomic sequences
Time to analyse your data using woods "a functional annotator and classifier of genomic and metagenomic sequences" A recent publication out from our lab. Please explore and write back to ( ashok@iiserb.ac.in ) in case of any problem. Comments are welcome.  ...
Add a comment...
Wait while more posts are being loaded