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Keiichiro Ono
204 followers -
Software Engineer
Software Engineer

204 followers
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Trying to create this visualization only with one line of command using R/Python and Cytoscape.  This script will  be available as an open source project.
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French dish meets Japanese tradition.
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New Cytoscape book chapter in Japanese.
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Current status of our projects and future vision of service-oriented, modularized world of bioinformatics tools.
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Presentation slides for cyREST app (RECOMB/Cytoscape Workshop 2014 in San Diego).
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Fellow researchers: in what environment, if any, do you develop your re-runnable analyses?
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votes visible to Public
30%
RStudio
17%
iPython Notebook
5%
Taverna
6%
Galaxy
42%
I just hack something together myself
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Data viz hacker universe.  I just want to see how the committers of these popular data viz tools are connected, and looks all of these projects are connected by some "hub" developers.

Generated from graph data via GitHub API, processed in IPython Notebook with NetworkX,  and visualized in Cytoscape 3.1.1. 

#dataviz   #datavisualization  

http://cl.ly/XXgH/github_universe.png
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Sample site generated by "Export Cytoscape session as a Single Page Web Application" feature.  This will be available in Cytoscape 3.2.0:

http://chianti.ucsd.edu/~kono/web_session_metro/#/  
(Switch Style to "metro")
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Japan railways as graph rendered with Cytoscape. #dataviz  

http://cl.ly/Wy4M/japan_railways.png
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