Profile

Cover photo
Jonathan Eisen
Works at University Of California, Davis
Attended Harvard College
Lives in Davis, CA
19,223 followers|16,758,890 views
AboutPostsCollectionsPhotosYouTube+1'sReviews

Stream

Jonathan Eisen

Shared publicly  - 
 
Special Seminar Tuesday May 3, 2016 GBSF 4202 1PM Critical Assessment of Metagenome Interpretation (CAMI)  Alex Sczyrba Head of Bielefeld University Bioinformatics Services University of Bielefeld, Germany The interpretation of metagenomes relies on…
1
Add a comment...

Jonathan Eisen

Shared publicly  - 
 
On my evolving thoughts on the #UCDavis saga involving Chancellor Linda Katehi http://phylogenomics.blogspot.com/2016/04/on-my-evolving-thoughts-on-ucdavis-saga.html?spref=tw 
2
Add a comment...

Jonathan Eisen

Shared publicly  - 
 
On my evolving thoughts on the #UCDavis saga involving Chancellor Linda Katehi
Still trying to wrap my brain around the controversy at UC Davis involving our Chancellor (the head of the University) Linda Katehi ( see some of these news stories if you are not aware of what is going on ).  In some sense I could just watch this all from ...
Still trying to wrap my brain around the controversy at UC Davis involving our Chancellor (the head of the University) Linda Katehi (see some of these news stories if you are not aware of what is going on). In some sense I c...
2
Randall Lee Reetz's profile photoKanati Siqua'Uyetsga's profile photo
2 comments
 
Yeah, as a UCD Alumnus, I wasn't happy about Katehi's appointment. She pretty much represents everything UCD shouldn't be, but the rot at UCD was evident long before Katehi arrived on the scene. I remember that as my tuition increase ten-fold, Vanderhoef thought it was just ducky to blow something like $250k remodeling his office. I still resent that ~33% of every research grant ends up being allocated to cover the bloated salaries in Mrak Hall. Katehi is just a symptom. The disease runs much deeper.  
Add a comment...

Jonathan Eisen

Shared publicly  - 
1
Add a comment...

Jonathan Eisen

Shared publicly  - 
 
“Identifying anti-inflammatory bacteria in the human gut and their prevalence in HIV patients” By Catherine Lozupone, Ph.D. Assistant Professor, Division of Biomedical Informatics and Personalized Medicine, School of Medicine, University of Colorado…
“Identifying anti-inflammatory bacteria in the human gut and their prevalence in HIV patients” By Catherine Lozupone, Ph.D. Assistant Professor, Division of Biomedical Informatics and Personalized …
1
Add a comment...

Jonathan Eisen

Shared publicly  - 
 
As many know, I just love Yolo Basin. Here are some of the better pics I have taken this Spring.
1
Add a comment...
Have him in circles
19,223 people
Ian Stuart's profile photo
Francis Colvais's profile photo
Brett Richardson's profile photo
Allan Botica's profile photo
Ala ud din Jutt's profile photo
John Dalton's profile photo
Jonathan Redford's profile photo
Kjartan Lorntzsen's profile photo
Rakib Mashiur's profile photo

Jonathan Eisen

Shared publicly  - 
 
“Bacteria-phage interactions within long lived hosts: how they happen and why it matters” Speaker: Britt Koskella Assistant Professor University of California, Berkeley Monday, May 2, 2016 4:00-5:00 PM 1022 Life Sciences Host: Perot Saelao (psaelao) (If…
1
Add a comment...

Jonathan Eisen

Shared publicly  - 
 
Still trying to wrap my brain around the controversy at UC Davis involving our Chancellor (the head of the University) Linda Katehi (see some of these news stories if you are not aware of what is going on). In some sense I c...
4
Add a comment...

Jonathan Eisen

Shared publicly  - 
 
katehi
Still trying to wrap my brain around the Katehi controversy at UC Davis.  On the one hand, I am disappointed in many of the things that her administration has done.  On the other hand, I like a lot of what they have done, especially in regard to diversity i...
Still trying to wrap my brain around the Katehi controversy at UC Davis. On the one hand, I am disappointed in many of the things that her administration has done. On the other hand, I like a lot of what they have done, esp...
1
Jason Moore's profile photo
 
Did you delete the post?
Add a comment...

Jonathan Eisen

Shared publicly  - 
 
New papers on microbes and the built environment. Microbes and fermenting households Samples collected through the Second Annual San Diego Fermentation Festival: From Sample to Multi-Omics Conclusions in under 48 Hours – Robert A. Quinn – mSystems (OA)…
1
Qaiser imran imran's profile photo
 
fermenting households Samples collected through the Second Annual San Diego
Fermentation Festival: From Sample to Multi-Omics Conclusions in under 48
Hours – Robert A. Quinn – mSystems (OA)…
households Samples collected through the Second Annual San Diego Fermenta...
that you had subscribed to. Unsubscribe from these emails.
reply.
Add a comment...

Jonathan Eisen

Shared publicly  - 
 
Now that QIIME 2 is officially funded (see my recent announcement here on the American Gut Blog), the Caporaso Lab at Northern Arizona University is hiring a new full-time developer to work on QIIME, scikit-bio, An Introduction to Applied Bioinformatics,…
1
Add a comment...

Jonathan Eisen

Shared publicly  - 
 
Spring at #Yolo Basin
As many know, I just love Yolo Basin.  Here are some of the better pics I have taken this Spring.
As many know, I just love Yolo Basin. Here are some of the better pics I have taken this Spring.
1
Add a comment...
Jonathan's Collections
People
Have him in circles
19,223 people
Ian Stuart's profile photo
Francis Colvais's profile photo
Brett Richardson's profile photo
Allan Botica's profile photo
Ala ud din Jutt's profile photo
John Dalton's profile photo
Jonathan Redford's profile photo
Kjartan Lorntzsen's profile photo
Rakib Mashiur's profile photo
Work
Occupation
Professor at UC Davis
Employment
  • University Of California, Davis
    Professor, 2006 - present
  • DOE Joint Genome Institute
    Adjunct Scientist, 2006 - 2011
  • The Institute For Genomic Research,
    Investigator, 1998 - 2006
  • The Johns Hopkins University
    Adjunct Professor, 2000 - 2010
  • The Public Defender Service of the District of Columbia
    Intern, 1987 - 1987
  • The Rocky Mountain Biological Lab
    Field Assistant, 1988 - 1988
Places
Map of the places this user has livedMap of the places this user has livedMap of the places this user has lived
Currently
Davis, CA
Previously
Bethesda, MD - Gaithersburg, MD - Boston, MA - Cambridge, MA - Stanford, CA - Gothic, CO - Brookline, MA - Medford, MA
Story
Tagline
All microbes, all the time.
Introduction
I am an evolutionary biologist and a Professor at U. C. Davis. My lab is in the UC Davis Genome Center and I hold appointments in the Department of Medical Microbiology and Immunology in the School of Medicine and the Department of Evolution and Ecology in the College of Biological Sciences. In addition I hold an Adjunct appointment at the Department of Energy Joint Genome Institute in Walnut Creek, CA. 

My research focuses on the origin of novelty (how new processes and functions originate). To study this I focus on sequencing and analyzing genomes of organisms, especially microbes and using phylogenomic analysis (see my lab site here which has more information on lab activities).  I am an author on more than 200 scientific publications as well as an Evolution textbook and a variety of other things.  

In addition to research, I am heavily involved in the Open Access publishing movement and am Academic Editor in Chief of PLoS Biology

Prior to moving to UC Davis I was on the faculty at The Institute for Genomic Research (TIGR) with an Adjunct Appointment in the Biology Department at the Johns Hopkins University. I did my PhD at Stanford studying the evolution of DNA repair processes in the lab of Phil Hanawalt and my undergraduate studies at Harvard College.

See my blog or tweets or Google+ Feed for the latest on what is going on in my lab and life and for conference reports, opinions on papers, and related information.

Finally, if you have made it this far and want to know more, here are some of my favorite stories written by others about me or my work
Education
  • Harvard College
    AB, Biological Sciences, 1986 - 1990
  • Stanford University
    PhD, Biology, 1991 - 1998
  • Walt Whitman High School, Bethesda, MD
    1983 - 1986
Basic Information
Gender
Male
Relationship
Married
Other names
Jon
Apps with Google+ Sign-in
  • WordPress
Jonathan Eisen's +1's are the things they like, agree with, or want to recommend.
On pastrami and the business of PLOS
www.michaeleisen.org

Last week my friend Andy Kern (a population geneticist at Rutgers) went on a bit of a bender on Twitter prompted by his discovery of PLOS's

At #UCDavis 3/9: “Authorship and the Promises of Digital Dissemination,”
phylogenomics.wordpress.com

A cross-disciplinary panel discussion on authorship in the digital age, with a focus on the specific goals and needs of academic authors.Aut

The Villain of CRISPR
www.michaeleisen.org

There is something mesmerizing about an evil genius at the height of their craft, and Eric Lander is an evil genius at the height of his cra

1/15 at #UCDavis: Tandy Warnow: New methods for species tree estimation ...
phylogenomics.wordpress.com

Special Seminar: Tandy Warnow The University of Illinois at Urbana-Champaign New methods for species tree estimation in the presence of gene

Removing my name from the author list of #closedaccess "Unified Microbio...
phylogenomics.blogspot.com

[View the story "Removing my name from the author list of #closedaccess "Unified Microbiome Initiative" paper in Science" on Storify]

Genome Engineering #GESB16 in Gent - for Men Only #YAMMM
phylogenomics.blogspot.com

So I just got an invite to this meeting: Looks interesting. Not that I work in the field. But I decided to check it out. So I went to the we

‘Antibiotic addict’ India losing fight against lethal bacteria - The Tim...
timesofindia.indiatimes.com

India is the world’s antibiotic popping capital, recording the highest number of such pills consumed annually — 13 billion pills as against

Microbiomania
phylogenomics.blogspot.com

I love microbiome research. I have been doing it for 10+ years. However many people oversell it. Here are some posts on this. Posts tageed "

Innovative Genomic Initiative Post Doc Fellowship at #UCDavis and some o...
phylogenomics.wordpress.com

Got this in email: The IGI is pleased to announce its first Postdoctoral Fellowship Award. This Award will provide 2 years of financial supp

Results for microbes collected by citizen scientists and grown on the In...
www.ucdmc.ucdavis.edu

Do microbes grow differently on the International Space Station than they do on Earth? Results from the growth of microbes collected by citi

The Koala Project! | Indiegogo
www.indiegogo.com

A research project studying how antibiotics affect the health of koalas | Crowdfunding is a democratic way to support the fundraising needs

9 things PBS Newshour famously gets horrible wrong in story on fast food...
phylogenomics.blogspot.com

Well, this is one of the worst microbiome news stories in a long time: Fast food kills gut bacteria that can keep you slim, book claims. So

Darwin: the Movie | Guest Blog, Scientific American Blog Network
blogs.scientificamerican.com

It's true, Mr. and Ms. Hollywood Producer, Nash, Hawking, Turing were great and all, and their stories brought big bucks and a few Oscars ro

China must restructure its academic incentives to curb research fraud
www.scmp.com

The idealised view of science as the curiosity-driven pursuit of knowledge to understand and improve the world around us has been tarnished.

Waiting for our room right now. Woman at the front desk - Erin - is being very rude
Public - a year ago
reviewed a year ago
1 review
Map
Map
Map