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Eleftherios Garyfallidis
Works at University of Sherbrooke
Attended University of Cambridge
Lives in Sherbrooke, QC, Canada
341 followers|136,540 views
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In latest DIPY 0.11.0 you can find 3 new frameworks. Diffusion kurtosis imaging, affine image registration and contextual enhancement of ODFs.

With the addition of affine image registration we are now able to do both linear and nonlinear registration natively in Python without the need of calling external libraries.

Here are the relevant tutorials for the new frameworks:

http://dipy.org/examples_built/reconst_dki.html#example-reconst-dki

http://dipy.org/examples_index.html#registration

http://dipy.org/examples_built/contextual_enhancement.html#example-contextual-enhancement

Enjoy the world of cutting edge research software!! :D
Crossing-preserving contextual enhancement¶. This demo presents an example of crossing-preserving contextual enhancement of FOD/ODF fields [Meesters2016_ISMRM], implementing the contextual PDE framework of [Portegies2015_PLoSOne] for processing HARDI data. The aim is to enhance the alignment of ...
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my boys are going to love this!
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Merry Christmas to all! Dipy will soon have a remarkable new release pushing the limits of diffusion and multi-modal registration. Want to help an incredible open source project? Ask at least 3 of your friends who may have interest in medical imaging to join the page. This page will be our basic news anchor to inform you about new features available in Dipy. Thank you all and best wishes from the Dipy developers!!!
Diffusion Imaging In Python
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Nature photographer Frans Lanting uses vibrant images to take us deep into the animal world. In this short, visual talk he calls for us to reconnect with other earthly creatures, and to shed the metaphorical skins that separate us from each other.
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I am very pleased to inform you that the paper Garyfallidis et al., "Robust and efficient linear registration of white-matter fascicles in the space of streamlines", Neuroimage 2015, is now available online. This link below allows for free access of the paper for a couple of weeks http://authors.elsevier ...
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Yes, there is. The work I presented in ISMRM this year. First please segment the bundle of your interest from one subject where you can see all the parts of the bundle that you want and then I will share with you a script that will do the job and recognize the same bundles in your other subjects. This will be available in DIPY asap. But until then I am happy to share the code with you. Sounds good? 
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Dipy featured at The Scientist magazine.
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Etsi etsi!!! Gz Gz :)
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Eleftherios Garyfallidis

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Pictures from Montreal Brainhack! Congratulations to the organizers. And thank you for the invitations. 
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Have him in circles
341 people
Diffusion Imaging in Python's profile photo
Udaya Devon's profile photo
Restoration 1 Cambridge's profile photo
Roxanne Beaudet's profile photo
Xristos Smarlamakis's profile photo
Phil E-money's profile photo
Antonis Argyros's profile photo
liquat alli's profile photo
Don Gabriel's profile photo
Education
  • University of Cambridge
    2008 - 2012
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Male
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Employment
  • University of Sherbrooke
    Postdoctoral Fellow, present
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Currently
Sherbrooke, QC, Canada
Previously
Cambridge, United Kingdom - Athens, Greece - Berkeley, California, US - Lausanne, Switzerland - Salt Lake City, Utah, US - Marrakesh, Morocco - Barcelona, Spain - Stockholm, Sweden - Los Angeles, CA, US - Boston, MA, US