Profile

Cover photo
Daniel Swan
278 followers|32,203 views
AboutPostsPhotosVideos+1's

Stream

Daniel Swan
moderator

SamplePrep  - 
 
Thoughts on 10X, NeoPrep and Kapa from the prolific Keith Robinson
1
Add a comment...

Daniel Swan
moderator

Meetings/Courses/Tutorials/Workshops  - 
 
Thoughts from Lex Nederbragt about possible directions and judging criteria for Assemblathon 3
1
Daniel Swan's profile photo
Add a comment...

Daniel Swan
moderator

Meetings/Courses/Tutorials/Workshops  - 
 
For those with an interest in open science & sequencing...
3
Add a comment...

Daniel Swan
moderator

Software Tools  - 
 
More a resource link than a tool, but a useful aggregation
 
Back in the day, there was one variant database, and only one–dbSNP. Then came HapMap and then 1000Genomes. Now, there are many such resources, each of which can be useful for annotating and filtering variants found in our own data. Here, I just pulled together a few such resources and a little ...
View original post
3
Add a comment...

Daniel Swan
moderator

General Discussion  - 
 
Another great blog post from GoldenHelix on HGVS nomenclature.
4
Add a comment...

Daniel Swan
moderator

General Discussion  - 
 
An interesting article from Frontiers in Oncology for those with an interest in the regulated clinical applications of NGS technologies:  http://journal.frontiersin.org/Journal/10.3389/fonc.2014.00078/full
2
2
Ronak Shah's profile photoJustin Li's profile photo
Add a comment...
Have him in circles
278 people
David Gifford's profile photo
Dorothy Bryant's profile photo
Stewart MacArthur's profile photo
Robert Syme's profile photo
Elmo Ranelli's profile photo
Graham Steel's profile photo
Knut Finstermeier's profile photo
Paul Watson's profile photo
ramveer choudhary's profile photo

Daniel Swan
moderator

General Discussion  - 
 
Omics!Omics! on what might be coming from BGI in terms of sequencing platforms
1
Add a comment...

Daniel Swan
moderator

IonTorrent  - 
 
An update on Ion Torrent news from AGBT via Omicsomics
1
Add a comment...

Daniel Swan
moderator

QuickTips  - 
 
Might be worth a read for those with aggressive quality filtering steps in their pipelines
The widespread and rapid adoption of high-throughput sequencing technologies has afforded researchers the opportunity to gain a deep understanding of genome level processes that underlie evolutiona...
1
1
Bioo Scientific's profile photo
Add a comment...

Daniel Swan
moderator

General Discussion  - 
 
A great read for many reasons whether you're a bioinformatician or a biologist
 
The future of bioinformatics and the NGS assay, a lecture transcript by Sean Eddy 
View original post
1
Add a comment...

Daniel Swan
moderator

Software Tools  - 
 
Thoughts from Ewan Birney on the latest samtools release.
 
CRAM goes mainline
Two weeks ago there was the announcement from John Marshall from Sanger for SAMtools 1.0 - one of the two most widely used Next Generation Sequencing ( NGS) variant-calling tools  embedded in hundreds if not thousands of bioinformatics pipelines worldwide ....
Two weeks ago there was the announcement from John Marshall from Sanger for SAMtools 1.0 - one of the two most widely used Next Generation Sequencing (NGS) variant-calling tools embedded in hundreds if not thousands of bioinf...
View original post
2
Duarte Molha (Pepetideo)'s profile photo
 
IGV still does not support that format right?
Add a comment...
People
Have him in circles
278 people
David Gifford's profile photo
Dorothy Bryant's profile photo
Stewart MacArthur's profile photo
Robert Syme's profile photo
Elmo Ranelli's profile photo
Graham Steel's profile photo
Knut Finstermeier's profile photo
Paul Watson's profile photo
ramveer choudhary's profile photo
Basic Information
Gender
Male
Other names
Dan
Links
Daniel Swan's +1's are the things they like, agree with, or want to recommend.
Swype Keyboard
market.android.com

New Swype is even more powerful and personal! Get it today!• 250+ Million Users and Growing • Guinness World Record – Fastest Time to Type a

JuiceSSH - SSH Client
market.android.com

The all in one terminal client for Android including SSH, Local Shell, Mosh and Telnet support. Features: - Full colour terminal / ssh clien

Akorn
market.android.com

The Akorn project is now in beta testing, offering users the ability to effortlessly monitor the emerging scientific literature across multi

Twitter
market.android.com

With Twitter, you can watch the world unfold like never before. • Get real-time stories, pictures, videos, conversations, ideas, and inspira

Titanium Backup ★ root
market.android.com

☆Needs ROOT, Android 1.5-4.2+ (ARM,x86,MIPS) ☆Over 10 million users, 30+ languages. ☆PRO Key is available on Play Store! ☆Voted #1 TOP ROOT

Chrome Browser - Google
market.android.com

Browse fast with the Chrome web browser on your Android phone and tablet. Sign in to sync your Chrome browser experience from your computer

Feedly - Google Reader | RSS
market.android.com

Feedly - The Google Reader Magazine.Feedly is a fast and stylish way to read and share the content of your favorite sites. It brings a fresh

fusioncatcher
code.google.com

Fusion Genes Finder for RNA-seq data

3 Tips for Better Black and White Conversion using Lightroom
digital-photography-school.com

Ever wondered how the professional photographers get those dreamy black and white or sepia toned images? Wonder why yours come out looking d

Getting Genetics Done: Stop Hosting Data and Code on your Lab Website
gettinggeneticsdone.blogspot.com

The first gives us some alarming statistics. In a survey of nearly 1000 web services published in the Nucleic Acids Web Server Issue between